scalex.plot.plot_meta

scalex.plot.plot_meta(adata, use_rep=None, color='celltype', batch='batch', colors=None, cmap='Blues', vmax=1, vmin=0, mask=True, annot=False, save=None, fontsize=8)

Plot meta correlations among batches

Parameters:

• adata – AnnData

• use_rep – the cell representations or embeddings used to calculate the correlations, default is latent generated by SCALE v2

• batch – the meta information based-on, default is batch

• colors – colors for each batch

• cmap – color map for information to be shown

• vmax – max value

• vmin – min value

• mask – value to be masked

• annot – show specific values

• save – save the figure

• fontsize – font size