scalex.plot.plot_meta2

scalex.plot.plot_meta2(adata, use_rep='latent', color='celltype', batch='batch', color_map=None, figsize=(10, 10), cmap='Blues', batches=None, annot=False, save=None, cbar=True, keep=False, fontsize=8, vmin=0, vmax=1)

Plot meta correlations between two batches

Parameters:

• adata – AnnData

• use_rep – the cell representations or embeddings used to calculate the correlations, default is latent generated by SCALE v2

• batch – the meta information based-on, default is batch

• colors – colors for each batch

• cmap – color map for information to be shown

• vmax – max value

• vmin – min value

• mask – value to be masked

• annot – show specific values

• save – save the figure

• fontsize – font size