Tutorial
Integration
before integration

after SCALEX integration

Projection
Map new data to the embeddings of reference
A pancreas reference was created by integrating eight batches.
Here, map pancreas_gse81547, pancreas_gse83139 and pancreas_gse114297 to the embeddings of pancreas reference.

Label transfer
Annotate cells in new data through label transfer
Label transfer tabula muris data and mouse kidney data from mouse atlas reference
mouse atlas reference

query tabula muris aging and query mouse kidney


Integration scATAC-seq data

Integration cross-modality data
Integrate scRNA-seq and scATAC-seq dataset

Spatial data (To be updated)
Integrating spatial data with scRNA-seq